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Chang H, Nayak N, Spellman PT, Parvin B.  2013.  Characterization of Tissue Histopathology via Predictive Sparse Decomposition and Spatial Pyramid Matching. Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2013 - 16th International Conference, Nagoya, Japan, September 22-26, 2013, Proceedings, Part {II}.
Chang H, Zhou Y, Spellman PT, Parvin B.  2013.  Stacked Predictive Sparse Coding for Classification of Distinct Regions in Tumor Histopathology. {IEEE} International Conference on Computer Vision, {ICCV} 2013, Sydney, Australia, December 1-8, 2013.
Cheng Q, Bilgin CCagatay, Fonteney G, Chang H, Henderson M, Han J, Parvin B.  2016.  Stiffness of the microenvironment upregulates ERBB2 expression in 3D cultures of MCF10A within the range of mammographic density.. Sci Rep. 6:28987.
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DeFilippis RAnna, Chang H, Dumont N, Rabban JT, Chen Y-Y, Fontenay GV, Berman HK, Gauthier ML, Zhao J, Hu D et al..  2012.  CD36 repression activates a multicellular stromal program shared by high mammographic density and tumor tissues. Cancer Discov. 2:826-39.
DeFilippis RAnna, Fordyce C, Patten K, Chang H, Zhao J, Fontenay GV, Kerlikowske K, Parvin B, Tlsty TD.  2014.  Stress signaling from human mammary epithelial cells contributes to phenotypes of mammographic density. Cancer Res. 74:5032-44.
Ding D, Yong H, You N, Lu W, Yang X, Ye X, Wang Y, Cai T, Zheng X, Chen H et al..  2022.  Prospective Study Reveals Host Microbial Determinants of Clinical Response to Fecal Microbiota Transplant Therapy in Type 2 Diabetes Patients.. Front Cell Infect Microbiol. 12:820367.
Dumont N, Liu B, DeFilippis RAnna, Chang H, Rabban JT, Karnezis AN, Tjoe JA, Marx J, Parvin B, Tlsty TD.  2013.  Breast fibroblasts modulate early dissemination, tumorigenesis, and metastasis through alteration of extracellular matrix characteristics. Neoplasia. 15:249-62.
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Groesser T, Fontenay GV, Han J, Chang H, Pluth J, Parvin B.  2015.  Quantification of the Dynamics of DNA Repair to Ionizing Radiation via Colocalization of 53BP1 and γH2AX. Video Bioinformatics: From Live Imaging to Knowledge.
Groesser T, Chang H, Fontenay G, Chen J, Costes SV, Barcellos-Hoff MHelen, Parvin B, Rydberg B.  2011.  Persistence of γ-H2AX and 53BP1 foci in proliferating and non-proliferating human mammary epithelial cells after exposure to γ-rays or iron ions. Int J Radiat Biol. 87:696-710.
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Han J, Chang H, Fontenay G, Wang NJ, Gray JW, Parvin B.  2009.  Morphometric Subtyping for a Panel of Breast Cancer Cell Lines. Proceedings of the 2009 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28 - July 1, 2009.
Han J, Chang H, Andarawewa K, Yaswen P, Barcellos-Hoff MHelen, Parvin B.  2010.  Multidimensional profiling of cell surface proteins and nuclear markers. IEEE/ACM Trans Comput Biol Bioinform. 7:80-90.
Han J, Chang H, Fontenay G, Spellman PT, Borowsky A, Parvin B.  2012.  Molecular bases of morphometric composition in Glioblastoma multiforme. 9th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2012, May 2-5, 2012, Barcelona, Spain, Proceedings.
Han J, Chang H, Giricz O, Lee GY, Baehner FL, Gray JW, Bissell MJ, Kenny PA, Parvin B.  2010.  Molecular predictors of 3D morphogenesis by breast cancer cell lines in 3D culture. PLoS Comput Biol. 6:e1000684.
Han J, Chang H, Andarawewa KL, Yaswen P, Barcellos-Hoff MHelen, Parvin B.  2008.  Integrated profiling of cell surface protein and nuclear marker for discriminant analysis. Proceedings of the 2008 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, May 14-17, 2008.
Han J, Chang H, Yang Q, Fontenay G, Groesser T, M Barcellos-Hoff H, Parvin B.  2011.  Multiscale iterative voting for differential analysis of stress response for 2D and 3D cell culture models. J Microsc. 241:315-26.
Han J, Chang H, Yang Q, Barcellos-Hoff MHelen, Parvin B.  2006.  3D Segmentation of Mammospheres for Localization Studies. Advances in Visual Computing, Second International Symposium, {ISVC} 2006, Lake Tahoe, NV, USA, November 6-8, 2006 Proceedings, Part {I}.
Han J, Fontenay GV, Wang Y, Mao J-H, Chang H.  2016.  Phenotypic Characterization of Breast Invasive Carcinoma via Transferable Tissue Morphometric Patterns learned from Glioblastoma Multiforme.. Proc IEEE Int Symp Biomed Imaging. 2016:1025-1028.
Han J, Chang H, Yang Q, Barcellos-Hoff MHelen, Parvin B.  2007.  Segmentation of Mammosphere Structures from Volumetric Data. Proceedings of the 2007 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, Washington, DC, USA, April 12-16, 2007.
Han J, Chang H, Loss LA, Zhang K, Baehner FL, Gray JW, Spellman PT, Parvin B.  2011.  Comparison of sparse coding and kernel methods for histopathological classification of gliobastoma multiforme. Proceedings of the 8th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2011, March 30 - April 2, 2011, Chicago, Illinois, {USA}.
Han J, Wang Y, Cai W, Borowsky A, Parvin B, Chang H.  2016.  Integrative Analysis of Cellular Morphometric Context Reveals Clinically Relevant Signatures in Lower Grade Glioma. Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2016 - 19th International Conference, Athens, Greece, October 17-21, 2016, Proceedings, Part {I}.
Hang B, Wang P, Zhao Y, Chang H, Mao J-H, Snijders AM.  2020.  Thirdhand smoke: Genotoxicity and carcinogenic potential.. Chronic Dis Transl Med. 6(1):27-34.
He L, Zhou Y-X, Zhang Y, Hang B, Chang H, Schick SF, Celniker SE, Xia Y, Snijders AM, Mao J-H.  2021.  Thirdhand cigarette smoke leads to age-dependent and persistent alterations in the cecal microbiome of mice.. Microbiologyopen. 10(3):e1198.
He L, Wang P, Schick SF, Huang A, Jacob P, Yang X, Xia Y, Snijders AM, Mao J-H, Chang H et al..  2021.  Genetic background influences the effect of thirdhand smoke exposure on anxiety and memory in Collaborative Cross mice.. Sci Rep. 11(1):13285.
Hung M-S, Xu Z, Chen Y, Smith E, Mao J-H, Hsieh D, Lin Y-C, Yang C-T, Jablons DM, You L.  2013.  Hematein, a casein kinase II inhibitor, inhibits lung cancer tumor growth in a murine xenograft model.. Int J Oncol. 43:1517-22.
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Jiang C, Zhao Y, Yuan B, Chang H, Hang B, Snijders AM, Mao J-H, Zou X, Wang P.  2020.  Identification of a novel 15-gene expression signature predicting overall survival of human colorectal cancer.. Clin Transl Med. 10(8):e258.

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