Publication

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Conference Paper
Chang H, DeFilippis RAnna, Tlsty TD, Parvin B.  2008.  Scoring histological sections through immunohistochemistry. Proceedings of the 2008 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, May 14-17, 2008.
Han J, Chang H, Yang Q, Barcellos-Hoff MHelen, Parvin B.  2007.  Segmentation of Mammosphere Structures from Volumetric Data. Proceedings of the 2007 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, Washington, DC, USA, April 12-16, 2007.
Chang H, Parvin B.  2006.  Segmentation of Three Dimensional Cell Culture Models from a Single Focal Plane. Advances in Visual Computing, Second International Symposium, {ISVC} 2006 Lake Tahoe, NV, USA, November 6-8, 2006. Proceedings, Part {II}.
Chang H, Zhou Y, Spellman PT, Parvin B.  2013.  Stacked Predictive Sparse Coding for Classification of Distinct Regions in Tumor Histopathology. {IEEE} International Conference on Computer Vision, {ICCV} 2013, Sydney, Australia, December 1-8, 2013.
Chang H, Auer M, Parvin B.  2009.  Structural Annotation of EM Images by Graph Cut. Proceedings of the 2009 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28 - July 1, 2009.
Journal Article
Srinivasa G, Fickus MC, Guo Y, Linstedt AD, Kovacević J.  2009.  Active mask segmentation of fluorescence microscope images.. IEEE Trans Image Process. 18:1817-29.
Bilgin CCagatay, Fontenay G, Cheng Q, Chang H, Han J, Parvin B.  2016.  BioSig3D: High Content Screening of Three-Dimensional Cell Culture Models. PLoS One. 11:e0148379.
Dumont N, Liu B, DeFilippis RAnna, Chang H, Rabban JT, Karnezis AN, Tjoe JA, Marx J, Parvin B, Tlsty TD.  2013.  Breast fibroblasts modulate early dissemination, tumorigenesis, and metastasis through alteration of extracellular matrix characteristics. Neoplasia. 15:249-62.
DeFilippis RAnna, Chang H, Dumont N, Rabban JT, Chen Y-Y, Fontenay GV, Berman HK, Gauthier ML, Zhao J, Hu D et al..  2012.  CD36 repression activates a multicellular stromal program shared by high mammographic density and tumor tissues. Cancer Discov. 2:826-39.
Liu X-P, Jin X, Ahmadian SSeyed, Yang X, Tian S-F, Cai Y-X, Chawla K, Snijders AM, Xia Y, van Diest PJ et al..  2022.  Clinical Significance and Molecular Annotation of Cellular Morphometric Subtypes in Lower Grade Gliomas discovered by Machine Learning.. Neuro Oncol.
Zhang Y, Chen T, Zhang Y, Hu Q, Wang X, Chang H, Mao J-H, Snijders AM, Xia Y.  2021.  Contribution of trace element exposure to gestational diabetes mellitus through disturbing the gut microbiome.. Environ Int. 153:106520.
Chang H, Wen Q, Parvin B.  2015.  Coupled segmentation of nuclear and membrane-bound macromolecules through voting and multiphase level set. Pattern Recognition. 48:882–893.
Yan H, Mao X, Yang X, Xia Y, Wang C, Wang J, Xia R, Xu X, Wang Z, Li Z et al..  2021.  Development and Validation of an Unsupervised Feature Learning System for Leukocyte Characterization and Classification: A Multi-Hospital Study. 129(6):1837-1856.
Parvin B, Chang H, Han J, Fontenay G.  2015.  Diagnostic and prognostic histopathology system using morphometric indices.
Yang H, Zhang M, Mao X-Y, Chang H, Perez-Losada J, Mao J-H.  2021.  Distinct Clinical Impact and Biological Function of Angiopoietin and Angiopoietin-like Proteins in Human Breast Cancer.. Cells. 10(10)
Wang Z, Liu Y, Zhang P, Zhang W, Wang W, Curr K, Wei G, Mao J-H.  2013.  FAM83D promotes cell proliferation and motility by downregulating tumor suppressor gene FBXW7.. Oncotarget. 4:2476-86.
Chang H, Yang X, Moore J, Liu X-P, Jen K-Y, Snijders AM, Ma L, Chou W, Corchado-Cobos R, García-Sancha N et al..  2021.  From Mouse to Human: Cellular Morphometric Subtype Learned From Mouse Mammary Tumors Provides Prognostic Value in Human Breast Cancer.. Front Oncol. 11:819565.
Mao J-H, Kim Y-M, Zhou Y-X, Hu D, Zhong C, Chang H, Brislawn CJ, Fansler S, Langley S, Wang Y et al..  2020.  Genetic and metabolic links between the murine microbiome and memory.. Microbiome. 8(1):53.
He L, Wang P, Schick SF, Huang A, Jacob P, Yang X, Xia Y, Snijders AM, Mao J-H, Chang H et al..  2021.  Genetic background influences the effect of thirdhand smoke exposure on anxiety and memory in Collaborative Cross mice.. Sci Rep. 11(1):13285.
Chang H, DeFilippis RAnna, Tlsty TD, Parvin B.  2009.  Graphical methods for quantifying macromolecules through bright field imaging. Bioinformatics. 25:1070–1075.
Jin X, Zhang Y, Celniker SE, Xia Y, Mao J-H, Snijders AM, Chang H.  2021.  Gut microbiome partially mediates and coordinates the effects of genetics on anxiety-like behavior in Collaborative Cross mice.. Sci Rep. 11(1):270.
Hung M-S, Xu Z, Chen Y, Smith E, Mao J-H, Hsieh D, Lin Y-C, Yang C-T, Jablons DM, You L.  2013.  Hematein, a casein kinase II inhibitor, inhibits lung cancer tumor growth in a murine xenograft model.. Int J Oncol. 43:1517-22.
Vatter FAPelissie, Schapiro D, Chang H, Borowsky AD, Lee JK, Parvin B, Stampfer MR, LaBarge MA, Bodenmiller B, Lorens JB.  2018.  High-Dimensional Phenotyping Identifies Age-Emergent Cells in Human Mammary Epithelia.. Cell Rep. 23(4):1205-1219.
Zhong C, He L, Lee S-Y, Chang H, Zhang Y, Threadgill DW, Yuan Y, Zhou F, Celniker SE, Xia Y et al..  2021.  Host genetics and gut microbiota cooperatively contribute to azoxymethane-induced acute toxicity in Collaborative Cross mice.. Arch Toxicol. 95(3):949-958.
Jiang C, Zhao Y, Yuan B, Chang H, Hang B, Snijders AM, Mao J-H, Zou X, Wang P.  2020.  Identification of a novel 15-gene expression signature predicting overall survival of human colorectal cancer.. Clin Transl Med. 10(8):e258.

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