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Journal Article
Xia Y, Ji Z, Krylov A, Chang H, Cai W.  2017.  Machine Learning in Multimodal Medical Imaging.. Biomed Res Int. 2017:1278329.
Rejniak KA, Wang SE, Bryce NS, Chang H, Parvin B, Jourquin J, Estrada L, Gray JW, Arteaga CL, Weaver AM et al..  2010.  Linking changes in epithelial morphogenesis to cancer mutations using computational modeling. PLoS Comput Biol. 6
Parvin B, Yang Q, Han J, Chang H, Rydberg B, Barcellos-Hoff MHelen.  2007.  Iterative Voting for Inference of Structural Saliency and Characterization of Subcellular Events. {IEEE} Trans. Image Processing. 16:615–623.
Chang H, Han J, Borowsky A, Loss LA, Gray JW, Spellman PT, Parvin B.  2013.  Invariant Delineation of Nuclear Architecture in Glioblastoma Multiforme for Clinical and Molecular Association. {IEEE} Trans. Med. Imaging. 32:670–682.
Bilgin CCagatay, Kim S, Leung E, Chang H, Parvin B.  2013.  Integrated profiling of three dimensional cell culture models and 3D microscopy. Bioinformatics. 29:3087–3093.
Nath S, Spencer VA, Han J, Chang H, Zhang K, Fontenay GV, Anderson C, Hyman JM, Nilsen-Hamilton M, Chang Y-T et al..  2012.  Identification of fluorescent compounds with non-specific binding property via high throughput live cell microscopy. PLoS One. 7:e28802.
Mao AW, Barck H, Young J, Paley A, Mao J-H, Chang H.  2022.  Identification of a novel cancer microbiome signature for predicting prognosis of human breast cancer patients.. Clin Transl Oncol. 24(3):597-604.
Jiang C, Zhao Y, Yuan B, Chang H, Hang B, Snijders AM, Mao J-H, Zou X, Wang P.  2020.  Identification of a novel 15-gene expression signature predicting overall survival of human colorectal cancer.. Clin Transl Med. 10(8):e258.
Zhong C, He L, Lee S-Y, Chang H, Zhang Y, Threadgill DW, Yuan Y, Zhou F, Celniker SE, Xia Y et al..  2021.  Host genetics and gut microbiota cooperatively contribute to azoxymethane-induced acute toxicity in Collaborative Cross mice.. Arch Toxicol. 95(3):949-958.
Vatter FAPelissie, Schapiro D, Chang H, Borowsky AD, Lee JK, Parvin B, Stampfer MR, LaBarge MA, Bodenmiller B, Lorens JB.  2018.  High-Dimensional Phenotyping Identifies Age-Emergent Cells in Human Mammary Epithelia.. Cell Rep. 23(4):1205-1219.
Hung M-S, Xu Z, Chen Y, Smith E, Mao J-H, Hsieh D, Lin Y-C, Yang C-T, Jablons DM, You L.  2013.  Hematein, a casein kinase II inhibitor, inhibits lung cancer tumor growth in a murine xenograft model.. Int J Oncol. 43:1517-22.
Jin X, Zhang Y, Celniker SE, Xia Y, Mao J-H, Snijders AM, Chang H.  2021.  Gut microbiome partially mediates and coordinates the effects of genetics on anxiety-like behavior in Collaborative Cross mice.. Sci Rep. 11(1):270.
Chang H, DeFilippis RAnna, Tlsty TD, Parvin B.  2009.  Graphical methods for quantifying macromolecules through bright field imaging. Bioinformatics. 25:1070–1075.
He L, Wang P, Schick SF, Huang A, Jacob P, Yang X, Xia Y, Snijders AM, Mao J-H, Chang H et al..  2021.  Genetic background influences the effect of thirdhand smoke exposure on anxiety and memory in Collaborative Cross mice.. Sci Rep. 11(1):13285.
Mao J-H, Kim Y-M, Zhou Y-X, Hu D, Zhong C, Chang H, Brislawn CJ, Fansler S, Langley S, Wang Y et al..  2020.  Genetic and metabolic links between the murine microbiome and memory.. Microbiome. 8(1):53.
Chang H, Yang X, Moore J, Liu X-P, Jen K-Y, Snijders AM, Ma L, Chou W, Corchado-Cobos R, García-Sancha N et al..  2021.  From Mouse to Human: Cellular Morphometric Subtype Learned From Mouse Mammary Tumors Provides Prognostic Value in Human Breast Cancer.. Front Oncol. 11:819565.
Wang Z, Liu Y, Zhang P, Zhang W, Wang W, Curr K, Wei G, Mao J-H.  2013.  FAM83D promotes cell proliferation and motility by downregulating tumor suppressor gene FBXW7.. Oncotarget. 4:2476-86.
Yang H, Zhang M, Mao X-Y, Chang H, Perez-Losada J, Mao J-H.  2021.  Distinct Clinical Impact and Biological Function of Angiopoietin and Angiopoietin-like Proteins in Human Breast Cancer.. Cells. 10(10)
Parvin B, Chang H, Han J, Fontenay G.  2015.  Diagnostic and prognostic histopathology system using morphometric indices.
Yan H, Mao X, Yang X, Xia Y, Wang C, Wang J, Xia R, Xu X, Wang Z, Li Z et al..  2021.  Development and Validation of an Unsupervised Feature Learning System for Leukocyte Characterization and Classification: A Multi-Hospital Study. 129(6):1837-1856.
Chang H, Wen Q, Parvin B.  2015.  Coupled segmentation of nuclear and membrane-bound macromolecules through voting and multiphase level set. Pattern Recognition. 48:882–893.
Zhang Y, Chen T, Zhang Y, Hu Q, Wang X, Chang H, Mao J-H, Snijders AM, Xia Y.  2021.  Contribution of trace element exposure to gestational diabetes mellitus through disturbing the gut microbiome.. Environ Int. 153:106520.
Liu X-P, Jin X, Ahmadian SSeyed, Yang X, Tian S-F, Cai Y-X, Chawla K, Snijders AM, Xia Y, van Diest PJ et al..  2022.  Clinical Significance and Molecular Annotation of Cellular Morphometric Subtypes in Lower Grade Gliomas discovered by Machine Learning.. Neuro Oncol.
DeFilippis RAnna, Chang H, Dumont N, Rabban JT, Chen Y-Y, Fontenay GV, Berman HK, Gauthier ML, Zhao J, Hu D et al..  2012.  CD36 repression activates a multicellular stromal program shared by high mammographic density and tumor tissues. Cancer Discov. 2:826-39.
Dumont N, Liu B, DeFilippis RAnna, Chang H, Rabban JT, Karnezis AN, Tjoe JA, Marx J, Parvin B, Tlsty TD.  2013.  Breast fibroblasts modulate early dissemination, tumorigenesis, and metastasis through alteration of extracellular matrix characteristics. Neoplasia. 15:249-62.

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