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Author Title Type [ Year(Asc)]
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2012
Loss LA, Chang H, Sarkar P, Auer M, Parvin B.  2012.  Detection of 3D filamentous networks from tomographic electron microscopy. 9th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2012, May 2-5, 2012, Barcelona, Spain, Proceedings.
Nath S, Spencer VA, Han J, Chang H, Zhang K, Fontenay GV, Anderson C, Hyman JM, Nilsen-Hamilton M, Chang Y-T et al..  2012.  Identification of fluorescent compounds with non-specific binding property via high throughput live cell microscopy. PLoS One. 7:e28802.
Le QV, Han J, Gray JW, Spellman PT, Borowsky A, Parvin B.  2012.  Learning invariant features of tumor signature with independent subspace analysis. 9th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2012, May 2-5, 2012, Barcelona, Spain, Proceedings.
Han J, Chang H, Fontenay G, Spellman PT, Borowsky A, Parvin B.  2012.  Molecular bases of morphometric composition in Glioblastoma multiforme. 9th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2012, May 2-5, 2012, Barcelona, Spain, Proceedings.
Chang H, Han J, Spellman PT, Parvin B.  2012.  Multireference Level Set for the Characterization of Nuclear Morphology in Glioblastoma Multiforme. {IEEE} Trans. Biomed. Engineering. 59:3460–3467.
2011
Han J, Chang H, Loss LA, Zhang K, Baehner FL, Gray JW, Spellman PT, Parvin B.  2011.  Comparison of sparse coding and kernel methods for histopathological classification of gliobastoma multiforme. Proceedings of the 8th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2011, March 30 - April 2, 2011, Chicago, Illinois, {USA}.
Chang H, Fontenay G, Han J, Cong G, Baehner FL, Gray JW, Spellman PT, Parvin B.  2011.  Morphometic analysis of TCGA glioblastoma multiforme. {BMC} Bioinformatics. 12:484.
Han J, Chang H, Yang Q, Fontenay G, Groesser T, M Barcellos-Hoff H, Parvin B.  2011.  Multiscale iterative voting for differential analysis of stress response for 2D and 3D cell culture models. J Microsc. 241:315-26.
Groesser T, Chang H, Fontenay G, Chen J, Costes SV, Barcellos-Hoff MHelen, Parvin B, Rydberg B.  2011.  Persistence of γ-H2AX and 53BP1 foci in proliferating and non-proliferating human mammary epithelial cells after exposure to γ-rays or iron ions. Int J Radiat Biol. 87:696-710.
To MD, Quigley DA, Mao J-H, Del Rosario R, Hsu J, Hodgson G, Jacks T, Balmain A.  2011.  Progressive genomic instability in the FVB/Kras(LA2) mouse model of lung cancer.. Mol Cancer Res. 9:1339-45.
Nguyen DH, Oketch-Rabah HA, Illa-Bochaca I, Geyer FC, Reis-Filho JS, Mao J-H, Ravani SA, Zavadil J, Borowsky AD, D Jerry J et al..  2011.  Radiation acts on the microenvironment to affect breast carcinogenesis by distinct mechanisms that decrease cancer latency and affect tumor type.. Cancer Cell. 19:640-51.
2010
Rejniak KA, Wang SE, Bryce NS, Chang H, Parvin B, Jourquin J, Estrada L, Gray JW, Arteaga CL, Weaver AM et al..  2010.  Linking changes in epithelial morphogenesis to cancer mutations using computational modeling. PLoS Comput Biol. 6
Han J, Chang H, Giricz O, Lee GY, Baehner FL, Gray JW, Bissell MJ, Kenny PA, Parvin B.  2010.  Molecular predictors of 3D morphogenesis by breast cancer cell lines in 3D culture. PLoS Comput Biol. 6:e1000684.
Han J, Chang H, Andarawewa K, Yaswen P, Barcellos-Hoff MHelen, Parvin B.  2010.  Multidimensional profiling of cell surface proteins and nuclear markers. IEEE/ACM Trans Comput Biol Bioinform. 7:80-90.
Chang H, Parvin B.  2010.  Multiphase level set for automated delineation of membrane-bound macromolecules. Proceedings of the 2010 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, Rotterdam, The Netherlands, 14-17 April, 2010.
2009
Srinivasa G, Fickus MC, Guo Y, Linstedt AD, Kovacević J.  2009.  Active mask segmentation of fluorescence microscope images.. IEEE Trans Image Process. 18:1817-29.
Wen Q, Chang H, Parvin B.  2009.  A Delaunay Triangulation Approach for Segmenting Clumps of Nuclei. Proceedings of the 2009 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28 - July 1, 2009.
Chang H, DeFilippis RAnna, Tlsty TD, Parvin B.  2009.  Graphical methods for quantifying macromolecules through bright field imaging. Bioinformatics. 25:1070–1075.
Han J, Chang H, Fontenay G, Wang NJ, Gray JW, Parvin B.  2009.  Morphometric Subtyping for a Panel of Breast Cancer Cell Lines. Proceedings of the 2009 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28 - July 1, 2009.
Chang H, Auer M, Parvin B.  2009.  Structural Annotation of EM Images by Graph Cut. Proceedings of the 2009 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28 - July 1, 2009.
2008
Chang H, Yang Q, Parvin B.  2008.  A Bayesian approach for image segmentation with shape priors. 2008 {IEEE} Computer Society Conference on Computer Vision and Pattern Recognition {(CVPR} 2008), 24-26 June 2008, Anchorage, Alaska, {USA}.
Han J, Chang H, Andarawewa KL, Yaswen P, Barcellos-Hoff MHelen, Parvin B.  2008.  Integrated profiling of cell surface protein and nuclear marker for discriminant analysis. Proceedings of the 2008 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, May 14-17, 2008.
Chang H, DeFilippis RAnna, Tlsty TD, Parvin B.  2008.  Scoring histological sections through immunohistochemistry. Proceedings of the 2008 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, May 14-17, 2008.
2007
Parvin B, Yang Q, Han J, Chang H, Rydberg B, Barcellos-Hoff MHelen.  2007.  Iterative Voting for Inference of Structural Saliency and Characterization of Subcellular Events. {IEEE} Trans. Image Processing. 16:615–623.
Chang H, Yang Q, Auer M, Parvin B.  2007.  Modeling of Front Evolution with Graph Cut Optimization. Proceedings of the International Conference on Image Processing, {ICIP} 2007, September 16-19, 2007, San Antonio, Texas, {USA}.

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