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Chang H, DeFilippis RAnna, Tlsty TD, Parvin B. 2009. Graphical methods for quantifying macromolecules through bright field imaging. Bioinformatics. 25:1070–1075.

Jin X, Zhang Y, Celniker SE, Xia Y, Mao J-H, Snijders AM, Chang H. 2021. Gut microbiome partially mediates and coordinates the effects of genetics on anxiety-like behavior in Collaborative Cross mice.. Sci Rep. 11(1):270.

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Hung M-S, Xu Z, Chen Y, Smith E, Mao J-H, Hsieh D, Lin Y-C, Yang C-T, Jablons DM, You L. 2013. Hematein, a casein kinase II inhibitor, inhibits lung cancer tumor growth in a murine xenograft model.. Int J Oncol. 43:1517-22.

Vatter FAPelissie, Schapiro D, Chang H, Borowsky AD, Lee JK, Parvin B, Stampfer MR, LaBarge MA, Bodenmiller B, Lorens JB. 2018. High-Dimensional Phenotyping Identifies Age-Emergent Cells in Human Mammary Epithelia.. Cell Rep. 23(4):1205-1219.

Zhong C, He L, Lee S-Y, Chang H, Zhang Y, Threadgill DW, Yuan Y, Zhou F, Celniker SE, Xia Y et al.. 2021. Host genetics and gut microbiota cooperatively contribute to azoxymethane-induced acute toxicity in Collaborative Cross mice.. Arch Toxicol. 95(3):949-958.

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Jiang C, Zhao Y, Yuan B, Chang H, Hang B, Snijders AM, Mao J-H, Zou X, Wang P. 2020. Identification of a novel 15-gene expression signature predicting overall survival of human colorectal cancer.. Clin Transl Med. 10(8):e258.

Mao AW, Barck H, Young J, Paley A, Mao J-H, Chang H. 2022. Identification of a novel cancer microbiome signature for predicting prognosis of human breast cancer patients.. Clin Transl Oncol. 24(3):597-604.

Nath S, Spencer VA, Han J, Chang H, Zhang K, Fontenay GV, Anderson C, Hyman JM, Nilsen-Hamilton M, Chang Y-T et al.. 2012. Identification of fluorescent compounds with non-specific binding property via high throughput live cell microscopy. PLoS One. 7:e28802.

Han J, Chang H, Andarawewa KL, Yaswen P, Barcellos-Hoff MHelen, Parvin B. 2008. Integrated profiling of cell surface protein and nuclear marker for discriminant analysis. Proceedings of the 2008 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, May 14-17, 2008.

Bilgin CCagatay, Kim S, Leung E, Chang H, Parvin B. 2013. Integrated profiling of three dimensional cell culture models and 3D microscopy. Bioinformatics. 29:3087–3093.

Han J, Wang Y, Cai W, Borowsky A, Parvin B, Chang H. 2016. Integrative Analysis of Cellular Morphometric Context Reveals Clinically Relevant Signatures in Lower Grade Glioma. Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2016 - 19th International Conference, Athens, Greece, October 17-21, 2016, Proceedings, Part {I}.

Chang H, Han J, Borowsky A, Loss LA, Gray JW, Spellman PT, Parvin B. 2013. Invariant Delineation of Nuclear Architecture in Glioblastoma Multiforme for Clinical and Molecular Association. {IEEE} Trans. Med. Imaging. 32:670–682.

Chang H, Yang Q, Pan C. 2006. An Iterative Bayesian Approach for Digital Matting. 18th International Conference on Pattern Recognition {(ICPR} 2006), 20-24 August 2006, Hong Kong, China.

Parvin B, Yang Q, Han J, Chang H, Rydberg B, Barcellos-Hoff MHelen. 2007. Iterative Voting for Inference of Structural Saliency and Characterization of Subcellular Events. {IEEE} Trans. Image Processing. 16:615–623.

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Le QV, Han J, Gray JW, Spellman PT, Borowsky A, Parvin B. 2012. Learning invariant features of tumor signature with independent subspace analysis. 9th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2012, May 2-5, 2012, Barcelona, Spain, Proceedings.

Rejniak KA, Wang SE, Bryce NS, Chang H, Parvin B, Jourquin J, Estrada L, Gray JW, Arteaga CL, Weaver AM et al.. 2010. Linking changes in epithelial morphogenesis to cancer mutations using computational modeling. PLoS Comput Biol. 6

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Xia Y, Ji Z, Krylov A, Chang H, Cai W. 2017. Machine Learning in Multimodal Medical Imaging.. Biomed Res Int. 2017:1278329.

Louie KB, Bowen BP, McAlhany S, Huang Y, Price JC, Mao J-H, Hellerstein M, Northen TR. 2013. Mass spectrometry imaging for in situ kinetic histochemistry.. Sci Rep. 3:1656.

Qin X, Wu C, Chang H, Lu H, Zhang X. 2020. Match Feature U-Net: Dynamic Receptive Field Networks for Biomedical Image Segmentation. Symmetry. 12:1230.

Parvin B., Chang H, Zhou Y.. 2015. Methods for delineating cellular regions and classifying regions of histopathology and microanatomy.

Chang H, Yang Q, Auer M, Parvin B. 2007. Modeling of Front Evolution with Graph Cut Optimization. Proceedings of the International Conference on Image Processing, {ICIP} 2007, September 16-19, 2007, San Antonio, Texas, {USA}.

Han J, Chang H, Fontenay G, Spellman PT, Borowsky A, Parvin B. 2012. Molecular bases of morphometric composition in Glioblastoma multiforme. 9th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2012, May 2-5, 2012, Barcelona, Spain, Proceedings.

Chang H, Fontenay G, Bilgin CCagatay, Borowsky A, Spellman P, Parvin B. 2013. Molecular Correlates of Morphometric Subtypes in Glioblastoma Multiforme. Computational Systems Biology: From Molecular Mechanisms to Disease: Second Edition. :423–454.

Han J, Chang H, Giricz O, Lee GY, Baehner FL, Gray JW, Bissell MJ, Kenny PA, Parvin B. 2010. Molecular predictors of 3D morphogenesis by breast cancer cell lines in 3D culture. PLoS Comput Biol. 6:e1000684.

Chang H, Fontenay G, Han J, Cong G, Baehner FL, Gray JW, Spellman PT, Parvin B. 2011. Morphometic analysis of TCGA glioblastoma multiforme. {BMC} Bioinformatics. 12:484.

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