Publication

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Author Title [ Type(Asc)] Year
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Journal Article
Han J, Chang H, Yang Q, Fontenay G, Groesser T, M Barcellos-Hoff H, Parvin B.  2011.  Multiscale iterative voting for differential analysis of stress response for 2D and 3D cell culture models. J Microsc. 241:315-26.
Chang H, Han J, Spellman PT, Parvin B.  2012.  Multireference Level Set for the Characterization of Nuclear Morphology in Glioblastoma Multiforme. {IEEE} Trans. Biomed. Engineering. 59:3460–3467.
Han J, Chang H, Andarawewa K, Yaswen P, Barcellos-Hoff MHelen, Parvin B.  2010.  Multidimensional profiling of cell surface proteins and nuclear markers. IEEE/ACM Trans Comput Biol Bioinform. 7:80-90.
Chang H, Fontenay G, Han J, Cong G, Baehner FL, Gray JW, Spellman PT, Parvin B.  2011.  Morphometic analysis of TCGA glioblastoma multiforme. {BMC} Bioinformatics. 12:484.
Parvin B, Yang Q, Han J, Chang H, Rydberg B, Barcellos-Hoff MHelen.  2007.  Iterative Voting for Inference of Structural Saliency and Characterization of Subcellular Events. {IEEE} Trans. Image Processing. 16:615–623.
Chang H, Han J, Borowsky A, Loss LA, Gray JW, Spellman PT, Parvin B.  2013.  Invariant Delineation of Nuclear Architecture in Glioblastoma Multiforme for Clinical and Molecular Association. {IEEE} Trans. Med. Imaging. 32:670–682.
Nath S, Spencer VA, Han J, Chang H, Zhang K, Fontenay GV, Anderson C, Hyman JM, Nilsen-Hamilton M, Chang Y-T et al..  2012.  Identification of fluorescent compounds with non-specific binding property via high throughput live cell microscopy. PLoS One. 7:e28802.
Parvin B, Chang H, Han J, Fontenay G.  2015.  Diagnostic and prognostic histopathology system using morphometric indices.
Bilgin CCagatay, Fontenay G, Cheng Q, Chang H, Han J, Parvin B.  2016.  BioSig3D: High Content Screening of Three-Dimensional Cell Culture Models. PLoS One. 11:e0148379.
Conference Paper
Han J, Chang H, Yang Q, Barcellos-Hoff MHelen, Parvin B.  2007.  Segmentation of Mammosphere Structures from Volumetric Data. Proceedings of the 2007 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, Washington, DC, USA, April 12-16, 2007.
Chang H, Andarawewa KL, Han J, Barcellos-Hoff MHelen, Parvin B.  2007.  Perceptual Grouping of Membrane Signals in Cell-Based Assays. Proceedings of the 2007 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, Washington, DC, USA, April 12-16, 2007.
Han J, Chang H, Fontenay G, Wang NJ, Gray JW, Parvin B.  2009.  Morphometric Subtyping for a Panel of Breast Cancer Cell Lines. Proceedings of the 2009 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28 - July 1, 2009.
Han J, Chang H, Fontenay G, Spellman PT, Borowsky A, Parvin B.  2012.  Molecular bases of morphometric composition in Glioblastoma multiforme. 9th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2012, May 2-5, 2012, Barcelona, Spain, Proceedings.
Le QV, Han J, Gray JW, Spellman PT, Borowsky A, Parvin B.  2012.  Learning invariant features of tumor signature with independent subspace analysis. 9th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2012, May 2-5, 2012, Barcelona, Spain, Proceedings.
Han J, Wang Y, Cai W, Borowsky A, Parvin B, Chang H.  2016.  Integrative Analysis of Cellular Morphometric Context Reveals Clinically Relevant Signatures in Lower Grade Glioma. Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2016 - 19th International Conference, Athens, Greece, October 17-21, 2016, Proceedings, Part {I}.
Han J, Chang H, Andarawewa KL, Yaswen P, Barcellos-Hoff MHelen, Parvin B.  2008.  Integrated profiling of cell surface protein and nuclear marker for discriminant analysis. Proceedings of the 2008 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, May 14-17, 2008.
Han J, Chang H, Loss LA, Zhang K, Baehner FL, Gray JW, Spellman PT, Parvin B.  2011.  Comparison of sparse coding and kernel methods for histopathological classification of gliobastoma multiforme. Proceedings of the 8th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2011, March 30 - April 2, 2011, Chicago, Illinois, {USA}.
Han J, Chang H, Yang Q, Barcellos-Hoff MHelen, Parvin B.  2006.  3D Segmentation of Mammospheres for Localization Studies. Advances in Visual Computing, Second International Symposium, {ISVC} 2006, Lake Tahoe, NV, USA, November 6-8, 2006 Proceedings, Part {I}.
Book Chapter
Groesser T, Fontenay GV, Han J, Chang H, Pluth J, Parvin B.  2015.  Quantification of the Dynamics of DNA Repair to Ionizing Radiation via Colocalization of 53BP1 and γH2AX. Video Bioinformatics: From Live Imaging to Knowledge.