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Han J, Chang H, Yang Q, Barcellos-Hoff MHelen, Parvin B. 2006. 3D Segmentation of Mammospheres for Localization Studies. Advances in Visual Computing, Second International Symposium, {ISVC} 2006, Lake Tahoe, NV, USA, November 6-8, 2006 Proceedings, Part {I}.

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Loss LA, Bebis G, Chang H, Auer M, Sarkar P, Parvin B. 2012. Automatic segmentation and quantification of filamentous structures in electron tomography. {ACM} International Conference on Bioinformatics, Computational Biology and Biomedicine, BCB’ 12, Orlando, FL, {USA} - October 08 - 10, 2012.

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Chang H, Loss LA, Spellman PT, Borowsky A, Parvin B. 2012. Batch-invariant nuclear segmentation in whole mount histology sections. 9th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2012, May 2-5, 2012, Barcelona, Spain, Proceedings.

Bilgin CCagatay, Fontenay G, Cheng Q, Chang H, Han J, Parvin B. 2016. BioSig3D: High Content Screening of Three-Dimensional Cell Culture Models. PLoS One. 11:e0148379.

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DeFilippis RAnna, Chang H, Dumont N, Rabban JT, Chen Y-Y, Fontenay GV, Berman HK, Gauthier ML, Zhao J, Hu D et al.. 2012. CD36 repression activates a multicellular stromal program shared by high mammographic density and tumor tissues. Cancer Discov. 2:826-39.

Zhou Y, Chang H, Barner KE, Spellman PT, Parvin B. 2014. Classification of Histology Sections via Multispectral Convolutional Sparse Coding. 2014 {IEEE} Conference on Computer Vision and Pattern Recognition, {CVPR} 2014, Columbus, OH, USA, June 23-28, 2014.

Chang H, Borowsky A, Spellman PT, Parvin B. 2013. Classification of Tumor Histology via Morphometric Context. 2013 {IEEE} Conference on Computer Vision and Pattern Recognition, Portland, OR, USA, June 23-28, 2013.

Nayak N, Chang H, Borowsky A, Spellman PT, Parvin B. 2013. Classification of tumor histopathology via sparse feature learning. {ISBI}.

Han J, Chang H, Loss LA, Zhang K, Baehner FL, Gray JW, Spellman PT, Parvin B. 2011. Comparison of sparse coding and kernel methods for histopathological classification of gliobastoma multiforme. Proceedings of the 8th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2011, March 30 - April 2, 2011, Chicago, Illinois, {USA}.

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Chang H, Yang X, Moore J, Liu X-P, Jen K-Y, Snijders AM, Ma L, Chou W, Corchado-Cobos R, García-Sancha N et al.. 2021. From Mouse to Human: Cellular Morphometric Subtype Learned From Mouse Mammary Tumors Provides Prognostic Value in Human Breast Cancer.. Front Oncol. 11:819565.

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Mao J-H, Kim Y-M, Zhou Y-X, Hu D, Zhong C, Chang H, Brislawn CJ, Fansler S, Langley S, Wang Y et al.. 2020. Genetic and metabolic links between the murine microbiome and memory.. Microbiome. 8(1):53.

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Vatter FAPelissie, Schapiro D, Chang H, Borowsky AD, Lee JK, Parvin B, Stampfer MR, LaBarge MA, Bodenmiller B, Lorens JB. 2018. High-Dimensional Phenotyping Identifies Age-Emergent Cells in Human Mammary Epithelia.. Cell Rep. 23(4):1205-1219.

Vatter FAPelissie, Schapiro D, Chang H, Borowsky AD, Lee JK, Parvin B, Stampfer MR, LaBarge MA, Bodenmiller B, Lorens JB. 2018. High-Dimensional Phenotyping Identifies Age-Emergent Cells in Human Mammary Epithelia.. Cell Rep. 23(4):1205-1219.

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Mao AW, Barck H, Young J, Paley A, Mao J-H, Chang H. 2022. Identification of a novel cancer microbiome signature for predicting prognosis of human breast cancer patients.. Clin Transl Oncol. 24(3):597-604.

Han J, Chang H, Andarawewa KL, Yaswen P, Barcellos-Hoff MHelen, Parvin B. 2008. Integrated profiling of cell surface protein and nuclear marker for discriminant analysis. Proceedings of the 2008 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, May 14-17, 2008.

Bilgin CCagatay, Kim S, Leung E, Chang H, Parvin B. 2013. Integrated profiling of three dimensional cell culture models and 3D microscopy. Bioinformatics. 29:3087–3093.

Han J, Wang Y, Cai W, Borowsky A, Parvin B, Chang H. 2016. Integrative Analysis of Cellular Morphometric Context Reveals Clinically Relevant Signatures in Lower Grade Glioma. Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2016 - 19th International Conference, Athens, Greece, October 17-21, 2016, Proceedings, Part {I}.

Chang H, Han J, Borowsky A, Loss LA, Gray JW, Spellman PT, Parvin B. 2013. Invariant Delineation of Nuclear Architecture in Glioblastoma Multiforme for Clinical and Molecular Association. {IEEE} Trans. Med. Imaging. 32:670–682.

Parvin B, Yang Q, Han J, Chang H, Rydberg B, Barcellos-Hoff MHelen. 2007. Iterative Voting for Inference of Structural Saliency and Characterization of Subcellular Events. {IEEE} Trans. Image Processing. 16:615–623.

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Le QV, Han J, Gray JW, Spellman PT, Borowsky A, Parvin B. 2012. Learning invariant features of tumor signature with independent subspace analysis. 9th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2012, May 2-5, 2012, Barcelona, Spain, Proceedings.

Rejniak KA, Wang SE, Bryce NS, Chang H, Parvin B, Jourquin J, Estrada L, Gray JW, Arteaga CL, Weaver AM et al.. 2010. Linking changes in epithelial morphogenesis to cancer mutations using computational modeling. PLoS Comput Biol. 6

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Louie KB, Bowen BP, McAlhany S, Huang Y, Price JC, Mao J-H, Hellerstein M, Northen TR. 2013. Mass spectrometry imaging for in situ kinetic histochemistry.. Sci Rep. 3:1656.

Han J, Chang H, Fontenay G, Spellman PT, Borowsky A, Parvin B. 2012. Molecular bases of morphometric composition in Glioblastoma multiforme. 9th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2012, May 2-5, 2012, Barcelona, Spain, Proceedings.

Chang H, Fontenay G, Bilgin CCagatay, Borowsky A, Spellman P, Parvin B. 2013. Molecular Correlates of Morphometric Subtypes in Glioblastoma Multiforme. Computational Systems Biology: From Molecular Mechanisms to Disease: Second Edition. :423–454.

Chang H, Fontenay G, Bilgin CCagatay, Borowsky A, Spellman P, Parvin B. 2013. Molecular Correlates of Morphometric Subtypes in Glioblastoma Multiforme. Computational Systems Biology: From Molecular Mechanisms to Disease: Second Edition. :423–454.

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