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A

Srinivasa G, Fickus MC, Guo Y, Linstedt AD, Kovacević J. 2009. Active mask segmentation of fluorescence microscope images.. IEEE Trans Image Process. 18:1817-29.

Loss LA, Bebis G, Chang H, Auer M, Sarkar P, Parvin B. 2012. Automatic segmentation and quantification of filamentous structures in electron tomography. {ACM} International Conference on Bioinformatics, Computational Biology and Biomedicine, BCB’ 12, Orlando, FL, {USA} - October 08 - 10, 2012.

B

Chang H, Loss LA, Spellman PT, Borowsky A, Parvin B. 2012. Batch-invariant nuclear segmentation in whole mount histology sections. 9th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2012, May 2-5, 2012, Barcelona, Spain, Proceedings.

Dumont N, Liu B, DeFilippis RAnna, Chang H, Rabban JT, Karnezis AN, Tjoe JA, Marx J, Parvin B, Tlsty TD. 2013. Breast fibroblasts modulate early dissemination, tumorigenesis, and metastasis through alteration of extracellular matrix characteristics. Neoplasia. 15:249-62.

C

Liu X-P, Jin X, Ahmadian SSeyed, Yang X, Tian S-F, Cai Y-X, Chawla K, Snijders AM, Xia Y, van Diest PJ et al.. 2022. Clinical Significance and Molecular Annotation of Cellular Morphometric Subtypes in Lower Grade Gliomas discovered by Machine Learning.. Neuro Oncol.

Liu X-P, Jin X, Ahmadian SSeyed, Yang X, Tian S-F, Cai Y-X, Chawla K, Snijders AM, Xia Y, van Diest PJ et al.. 2022. Clinical Significance and Molecular Annotation of Cellular Morphometric Subtypes in Lower Grade Gliomas discovered by Machine Learning.. Neuro Oncol.

Han J, Chang H, Loss LA, Zhang K, Baehner FL, Gray JW, Spellman PT, Parvin B. 2011. Comparison of sparse coding and kernel methods for histopathological classification of gliobastoma multiforme. Proceedings of the 8th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2011, March 30 - April 2, 2011, Chicago, Illinois, {USA}.

D

Loss LA, Chang H, Sarkar P, Auer M, Parvin B. 2012. Detection of 3D filamentous networks from tomographic electron microscopy. 9th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2012, May 2-5, 2012, Barcelona, Spain, Proceedings.

Yan H, Mao X, Yang X, Xia Y, Wang C, Wang J, Xia R, Xu X, Wang Z, Li Z et al.. 2021. Development and Validation of an Unsupervised Feature Learning System for Leukocyte Characterization and Classification: A Multi-Hospital Study. 129(6):1837-1856.

Yan H, Mao X, Yang X, Xia Y, Wang C, Wang J, Xia R, Xu X, Wang Z, Li Z et al.. 2021. Development and Validation of an Unsupervised Feature Learning System for Leukocyte Characterization and Classification: A Multi-Hospital Study. 129(6):1837-1856.

Yan H, Mao X, Yang X, Xia Y, Wang C, Wang J, Xia R, Xu X, Wang Z, Li Z et al.. 2021. Development and Validation of an Unsupervised Feature Learning System for Leukocyte Characterization and Classification: A Multi-Hospital Study. 129(6):1837-1856.

Yan H, Mao X, Yang X, Xia Y, Wang C, Wang J, Xia R, Xu X, Wang Z, Li Z et al.. 2021. Development and Validation of an Unsupervised Feature Learning System for Leukocyte Characterization and Classification: A Multi-Hospital Study. 129(6):1837-1856.

F

Wang Z, Liu Y, Zhang P, Zhang W, Wang W, Curr K, Wei G, Mao J-H. 2013. FAM83D promotes cell proliferation and motility by downregulating tumor suppressor gene FBXW7.. Oncotarget. 4:2476-86.

Chang H, Yang X, Moore J, Liu X-P, Jen K-Y, Snijders AM, Ma L, Chou W, Corchado-Cobos R, García-Sancha N et al.. 2021. From Mouse to Human: Cellular Morphometric Subtype Learned From Mouse Mammary Tumors Provides Prognostic Value in Human Breast Cancer.. Front Oncol. 11:819565.

G

Mao J-H, Kim Y-M, Zhou Y-X, Hu D, Zhong C, Chang H, Brislawn CJ, Fansler S, Langley S, Wang Y et al.. 2020. Genetic and metabolic links between the murine microbiome and memory.. Microbiome. 8(1):53.

H

Hung M-S, Xu Z, Chen Y, Smith E, Mao J-H, Hsieh D, Lin Y-C, Yang C-T, Jablons DM, You L. 2013. Hematein, a casein kinase II inhibitor, inhibits lung cancer tumor growth in a murine xenograft model.. Int J Oncol. 43:1517-22.

Vatter FAPelissie, Schapiro D, Chang H, Borowsky AD, Lee JK, Parvin B, Stampfer MR, LaBarge MA, Bodenmiller B, Lorens JB. 2018. High-Dimensional Phenotyping Identifies Age-Emergent Cells in Human Mammary Epithelia.. Cell Rep. 23(4):1205-1219.

Vatter FAPelissie, Schapiro D, Chang H, Borowsky AD, Lee JK, Parvin B, Stampfer MR, LaBarge MA, Bodenmiller B, Lorens JB. 2018. High-Dimensional Phenotyping Identifies Age-Emergent Cells in Human Mammary Epithelia.. Cell Rep. 23(4):1205-1219.

Vatter FAPelissie, Schapiro D, Chang H, Borowsky AD, Lee JK, Parvin B, Stampfer MR, LaBarge MA, Bodenmiller B, Lorens JB. 2018. High-Dimensional Phenotyping Identifies Age-Emergent Cells in Human Mammary Epithelia.. Cell Rep. 23(4):1205-1219.

Zhong C, He L, Lee S-Y, Chang H, Zhang Y, Threadgill DW, Yuan Y, Zhou F, Celniker SE, Xia Y et al.. 2021. Host genetics and gut microbiota cooperatively contribute to azoxymethane-induced acute toxicity in Collaborative Cross mice.. Arch Toxicol. 95(3):949-958.

I

Bilgin CCagatay, Kim S, Leung E, Chang H, Parvin B. 2013. Integrated profiling of three dimensional cell culture models and 3D microscopy. Bioinformatics. 29:3087–3093.

Chang H, Han J, Borowsky A, Loss LA, Gray JW, Spellman PT, Parvin B. 2013. Invariant Delineation of Nuclear Architecture in Glioblastoma Multiforme for Clinical and Molecular Association. {IEEE} Trans. Med. Imaging. 32:670–682.

L

Le QV, Han J, Gray JW, Spellman PT, Borowsky A, Parvin B. 2012. Learning invariant features of tumor signature with independent subspace analysis. 9th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2012, May 2-5, 2012, Barcelona, Spain, Proceedings.

M

Louie KB, Bowen BP, McAlhany S, Huang Y, Price JC, Mao J-H, Hellerstein M, Northen TR. 2013. Mass spectrometry imaging for in situ kinetic histochemistry.. Sci Rep. 3:1656.

Qin X, Wu C, Chang H, Lu H, Zhang X. 2020. Match Feature U-Net: Dynamic Receptive Field Networks for Biomedical Image Segmentation. Symmetry. 12:1230.

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