Publication

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Author Title Type [ Year(Asc)]
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2020
Mao J-H, Kim Y-M, Zhou Y-X, Hu D, Zhong C, Chang H, Brislawn CJ, Fansler S, Langley S, Wang Y et al..  2020.  Genetic and metabolic links between the murine microbiome and memory.. Microbiome. 8(1):53.
2016
Bilgin CCagatay, Fontenay G, Cheng Q, Chang H, Han J, Parvin B.  2016.  BioSig3D: High Content Screening of Three-Dimensional Cell Culture Models. PLoS One. 11:e0148379.
Han J, Fontenay GV, Wang Y, Mao J-H, Chang H.  2016.  Phenotypic Characterization of Breast Invasive Carcinoma via Transferable Tissue Morphometric Patterns learned from Glioblastoma Multiforme.. Proc IEEE Int Symp Biomed Imaging. 2016:1025-1028.
Cheng Q, Bilgin CCagatay, Fonteney G, Chang H, Henderson M, Han J, Parvin B.  2016.  Stiffness of the microenvironment upregulates ERBB2 expression in 3D cultures of MCF10A within the range of mammographic density.. Sci Rep. 6:28987.
2015
Parvin B, Chang H, Han J, Fontenay G.  2015.  Diagnostic and prognostic histopathology system using morphometric indices.
Groesser T, Fontenay GV, Han J, Chang H, Pluth J, Parvin B.  2015.  Quantification of the Dynamics of DNA Repair to Ionizing Radiation via Colocalization of 53BP1 and γH2AX. Video Bioinformatics: From Live Imaging to Knowledge.
2014
DeFilippis RAnna, Fordyce C, Patten K, Chang H, Zhao J, Fontenay GV, Kerlikowske K, Parvin B, Tlsty TD.  2014.  Stress signaling from human mammary epithelial cells contributes to phenotypes of mammographic density. Cancer Res. 74:5032-44.
DeFilippis RAnna, Fordyce C, Patten K, Chang H, Zhao J, Fontenay GV, Kerlikowske K, Parvin B, Tlsty TD.  2014.  Stress signaling from human mammary epithelial cells contributes to phenotypes of mammographic density. Cancer Res. 74:5032-44.
2013
Chang H, Fontenay G, Bilgin CCagatay, Borowsky A, Spellman P, Parvin B.  2013.  Molecular Correlates of Morphometric Subtypes in Glioblastoma Multiforme. Computational Systems Biology: From Molecular Mechanisms to Disease: Second Edition. :423–454.
2012
DeFilippis RAnna, Chang H, Dumont N, Rabban JT, Chen Y-Y, Fontenay GV, Berman HK, Gauthier ML, Zhao J, Hu D et al..  2012.  CD36 repression activates a multicellular stromal program shared by high mammographic density and tumor tissues. Cancer Discov. 2:826-39.
DeFilippis RAnna, Chang H, Dumont N, Rabban JT, Chen Y-Y, Fontenay GV, Berman HK, Gauthier ML, Zhao J, Hu D et al..  2012.  CD36 repression activates a multicellular stromal program shared by high mammographic density and tumor tissues. Cancer Discov. 2:826-39.
Nath S, Spencer VA, Han J, Chang H, Zhang K, Fontenay GV, Anderson C, Hyman JM, Nilsen-Hamilton M, Chang Y-T et al..  2012.  Identification of fluorescent compounds with non-specific binding property via high throughput live cell microscopy. PLoS One. 7:e28802.
Han J, Chang H, Fontenay G, Spellman PT, Borowsky A, Parvin B.  2012.  Molecular bases of morphometric composition in Glioblastoma multiforme. 9th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2012, May 2-5, 2012, Barcelona, Spain, Proceedings.
2011
Chang H, Fontenay G, Han J, Cong G, Baehner FL, Gray JW, Spellman PT, Parvin B.  2011.  Morphometic analysis of TCGA glioblastoma multiforme. {BMC} Bioinformatics. 12:484.
Han J, Chang H, Yang Q, Fontenay G, Groesser T, M Barcellos-Hoff H, Parvin B.  2011.  Multiscale iterative voting for differential analysis of stress response for 2D and 3D cell culture models. J Microsc. 241:315-26.
Groesser T, Chang H, Fontenay G, Chen J, Costes SV, Barcellos-Hoff MHelen, Parvin B, Rydberg B.  2011.  Persistence of γ-H2AX and 53BP1 foci in proliferating and non-proliferating human mammary epithelial cells after exposure to γ-rays or iron ions. Int J Radiat Biol. 87:696-710.
2009
Srinivasa G, Fickus MC, Guo Y, Linstedt AD, Kovacević J.  2009.  Active mask segmentation of fluorescence microscope images.. IEEE Trans Image Process. 18:1817-29.
Han J, Chang H, Fontenay G, Wang NJ, Gray JW, Parvin B.  2009.  Morphometric Subtyping for a Panel of Breast Cancer Cell Lines. Proceedings of the 2009 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28 - July 1, 2009.