Publication

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Journal Article
Zhong C, Han J, Borowsky A, Parvin B, Wang Y, Chang H.  2016.  When machine vision meets histology: A comparative evaluation of model architecture for classification of histology sections.. Med Image Anal. 35:530-543.
Zhong C, Han J, Borowsky A, Parvin B, Wang Y, Chang H.  2017.  When machine vision meets histology: A comparative evaluation of model architecture for classification of histology sections.. Med Image Anal. 35:530-543.
Chang H, Han J, Zhong C, Snijders AM, Mao J-H.  2018.  Unsupervised Transfer Learning via Multi-Scale Convolutional Sparse Coding for Biomedical Applications.. IEEE Trans Pattern Anal Mach Intell. 40(5):1182-1194.
Hang B, Wang P, Zhao Y, Chang H, Mao J-H, Snijders AM.  2020.  Thirdhand smoke: Genotoxicity and carcinogenic potential.. Chronic Dis Transl Med. 6(1):27-34.
He L, Zhou Y-X, Zhang Y, Hang B, Chang H, Schick SF, Celniker SE, Xia Y, Snijders AM, Mao J-H.  2021.  Thirdhand cigarette smoke leads to age-dependent and persistent alterations in the cecal microbiome of mice.. Microbiologyopen. 10(3):e1198.
Liang Y, Dong T, Chen M, He L, Wang T, Liu X, Chang H, Mao J-H, Hang B, Snijders AM et al..  2020.  Systematic Analysis of Impact of Sampling Regions and Storage Methods on Fecal Gut Microbiome and Metabolome Profiles.. mSphere. 5(1)
DeFilippis RAnna, Fordyce C, Patten K, Chang H, Zhao J, Fontenay GV, Kerlikowske K, Parvin B, Tlsty TD.  2014.  Stress signaling from human mammary epithelial cells contributes to phenotypes of mammographic density. Cancer Res. 74:5032-44.
Cheng Q, Bilgin CCagatay, Fonteney G, Chang H, Henderson M, Han J, Parvin B.  2016.  Stiffness of the microenvironment upregulates ERBB2 expression in 3D cultures of MCF10A within the range of mammographic density.. Sci Rep. 6:28987.
Chang H, Zhou Y, Borowsky A, Barner KE, Spellman PT, Parvin B.  2015.  Stacked Predictive Sparse Decomposition for Classification of Histology Sections. International Journal of Computer Vision. 113:3–18.
Chang H, Yang Q, Parvin B.  2007.  Segmentation of heterogeneous blob objects through voting and level set formulation. Pattern Recognition Letters. 28:1781–1787.
Nguyen DH, Oketch-Rabah HA, Illa-Bochaca I, Geyer FC, Reis-Filho JS, Mao J-H, Ravani SA, Zavadil J, Borowsky AD, D Jerry J et al..  2011.  Radiation acts on the microenvironment to affect breast carcinogenesis by distinct mechanisms that decrease cancer latency and affect tumor type.. Cancer Cell. 19:640-51.
Ding D, Yong H, You N, Lu W, Yang X, Ye X, Wang Y, Cai T, Zheng X, Chen H et al..  2022.  Prospective Study Reveals Host Microbial Determinants of Clinical Response to Fecal Microbiota Transplant Therapy in Type 2 Diabetes Patients.. Front Cell Infect Microbiol. 12:820367.
To MD, Quigley DA, Mao J-H, Del Rosario R, Hsu J, Hodgson G, Jacks T, Balmain A.  2011.  Progressive genomic instability in the FVB/Kras(LA2) mouse model of lung cancer.. Mol Cancer Res. 9:1339-45.
Han J, Fontenay GV, Wang Y, Mao J-H, Chang H.  2016.  Phenotypic Characterization of Breast Invasive Carcinoma via Transferable Tissue Morphometric Patterns learned from Glioblastoma Multiforme.. Proc IEEE Int Symp Biomed Imaging. 2016:1025-1028.
Groesser T, Chang H, Fontenay G, Chen J, Costes SV, Barcellos-Hoff MHelen, Parvin B, Rydberg B.  2011.  Persistence of γ-H2AX and 53BP1 foci in proliferating and non-proliferating human mammary epithelial cells after exposure to γ-rays or iron ions. Int J Radiat Biol. 87:696-710.
Bin J, Obst-Huebl L, Mao J-H, Nakamura K, Geulig LD, Chang H, Ji Q, He L, De Chant J, Kober Z et al..  2022.  A new platform for ultra-high dose rate radiobiological research using the BELLA PW laser proton beamline.. Sci Rep. 12(1):1484.
Jiménez-Sánchez D, Ariz M, Chang H, Matias-Guiu X, de Andrea CE, Ortiz-de-Solórzano C.  2022.  NaroNet: Discovery of tumor microenvironment elements from highly multiplexed images.. Med Image Anal. 78:102384.
Han J, Chang H, Yang Q, Fontenay G, Groesser T, M Barcellos-Hoff H, Parvin B.  2011.  Multiscale iterative voting for differential analysis of stress response for 2D and 3D cell culture models. J Microsc. 241:315-26.
Chang H, Han J, Spellman PT, Parvin B.  2012.  Multireference Level Set for the Characterization of Nuclear Morphology in Glioblastoma Multiforme. {IEEE} Trans. Biomed. Engineering. 59:3460–3467.
Han J, Chang H, Andarawewa K, Yaswen P, Barcellos-Hoff MHelen, Parvin B.  2010.  Multidimensional profiling of cell surface proteins and nuclear markers. IEEE/ACM Trans Comput Biol Bioinform. 7:80-90.
Chang H, Fontenay G, Han J, Cong G, Baehner FL, Gray JW, Spellman PT, Parvin B.  2011.  Morphometic analysis of TCGA glioblastoma multiforme. {BMC} Bioinformatics. 12:484.
Han J, Chang H, Giricz O, Lee GY, Baehner FL, Gray JW, Bissell MJ, Kenny PA, Parvin B.  2010.  Molecular predictors of 3D morphogenesis by breast cancer cell lines in 3D culture. PLoS Comput Biol. 6:e1000684.
Parvin B., Chang H, Zhou Y..  2015.  Methods for delineating cellular regions and classifying regions of histopathology and microanatomy.
Qin X, Wu C, Chang H, Lu H, Zhang X.  2020.  Match Feature U-Net: Dynamic Receptive Field Networks for Biomedical Image Segmentation. Symmetry. 12:1230.
Louie KB, Bowen BP, McAlhany S, Huang Y, Price JC, Mao J-H, Hellerstein M, Northen TR.  2013.  Mass spectrometry imaging for in situ kinetic histochemistry.. Sci Rep. 3:1656.

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