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Journal Article
Srinivasa G, Fickus MC, Guo Y, Linstedt AD, Kovacević J.  2009.  Active mask segmentation of fluorescence microscope images.. IEEE Trans Image Process. 18:1817-29.
Dumont N, Liu B, DeFilippis RAnna, Chang H, Rabban JT, Karnezis AN, Tjoe JA, Marx J, Parvin B, Tlsty TD.  2013.  Breast fibroblasts modulate early dissemination, tumorigenesis, and metastasis through alteration of extracellular matrix characteristics. Neoplasia. 15:249-62.
DeFilippis RAnna, Chang H, Dumont N, Rabban JT, Chen Y-Y, Fontenay GV, Berman HK, Gauthier ML, Zhao J, Hu D et al..  2012.  CD36 repression activates a multicellular stromal program shared by high mammographic density and tumor tissues. Cancer Discov. 2:826-39.
Zhang Y, Chen T, Zhang Y, Hu Q, Wang X, Chang H, Mao J-H, Snijders AM, Xia Y.  2021.  Contribution of trace element exposure to gestational diabetes mellitus through disturbing the gut microbiome.. Environ Int. 153:106520.
Yang H, Zhang M, Mao X-Y, Chang H, Perez-Losada J, Mao J-H.  2021.  Distinct Clinical Impact and Biological Function of Angiopoietin and Angiopoietin-like Proteins in Human Breast Cancer.. Cells. 10(10)
Wang Z, Liu Y, Zhang P, Zhang W, Wang W, Curr K, Wei G, Mao J-H.  2013.  FAM83D promotes cell proliferation and motility by downregulating tumor suppressor gene FBXW7.. Oncotarget. 4:2476-86.
He L, Wang P, Schick SF, Huang A, Jacob P, Yang X, Xia Y, Snijders AM, Mao J-H, Chang H et al..  2021.  Genetic background influences the effect of thirdhand smoke exposure on anxiety and memory in Collaborative Cross mice.. Sci Rep. 11(1):13285.
Hung M-S, Xu Z, Chen Y, Smith E, Mao J-H, Hsieh D, Lin Y-C, Yang C-T, Jablons DM, You L.  2013.  Hematein, a casein kinase II inhibitor, inhibits lung cancer tumor growth in a murine xenograft model.. Int J Oncol. 43:1517-22.
Mao AW, Barck H, Young J, Paley A, Mao J-H, Chang H.  2022.  Identification of a novel cancer microbiome signature for predicting prognosis of human breast cancer patients.. Clin Transl Oncol. 24(3):597-604.
Nath S, Spencer VA, Han J, Chang H, Zhang K, Fontenay GV, Anderson C, Hyman JM, Nilsen-Hamilton M, Chang Y-T et al..  2012.  Identification of fluorescent compounds with non-specific binding property via high throughput live cell microscopy. PLoS One. 7:e28802.
Rejniak KA, Wang SE, Bryce NS, Chang H, Parvin B, Jourquin J, Estrada L, Gray JW, Arteaga CL, Weaver AM et al..  2010.  Linking changes in epithelial morphogenesis to cancer mutations using computational modeling. PLoS Comput Biol. 6
Xia Y, Ji Z, Krylov A, Chang H, Cai W.  2017.  Machine Learning in Multimodal Medical Imaging.. Biomed Res Int. 2017:1278329.
Louie KB, Bowen BP, McAlhany S, Huang Y, Price JC, Mao J-H, Hellerstein M, Northen TR.  2013.  Mass spectrometry imaging for in situ kinetic histochemistry.. Sci Rep. 3:1656.
Han J, Chang H, Giricz O, Lee GY, Baehner FL, Gray JW, Bissell MJ, Kenny PA, Parvin B.  2010.  Molecular predictors of 3D morphogenesis by breast cancer cell lines in 3D culture. PLoS Comput Biol. 6:e1000684.
Han J, Chang H, Yang Q, Fontenay G, Groesser T, M Barcellos-Hoff H, Parvin B.  2011.  Multiscale iterative voting for differential analysis of stress response for 2D and 3D cell culture models. J Microsc. 241:315-26.
Jiménez-Sánchez D, Ariz M, Chang H, Matias-Guiu X, de Andrea CE, Ortiz-de-Solórzano C.  2022.  NaroNet: Discovery of tumor microenvironment elements from highly multiplexed images.. Med Image Anal. 78:102384.
Bin J, Obst-Huebl L, Mao J-H, Nakamura K, Geulig LD, Chang H, Ji Q, He L, De Chant J, Kober Z et al..  2022.  A new platform for ultra-high dose rate radiobiological research using the BELLA PW laser proton beamline.. Sci Rep. 12(1):1484.
Groesser T, Chang H, Fontenay G, Chen J, Costes SV, Barcellos-Hoff MHelen, Parvin B, Rydberg B.  2011.  Persistence of γ-H2AX and 53BP1 foci in proliferating and non-proliferating human mammary epithelial cells after exposure to γ-rays or iron ions. Int J Radiat Biol. 87:696-710.
Ding D, Yong H, You N, Lu W, Yang X, Ye X, Wang Y, Cai T, Zheng X, Chen H et al..  2022.  Prospective Study Reveals Host Microbial Determinants of Clinical Response to Fecal Microbiota Transplant Therapy in Type 2 Diabetes Patients.. Front Cell Infect Microbiol. 12:820367.
DeFilippis RAnna, Fordyce C, Patten K, Chang H, Zhao J, Fontenay GV, Kerlikowske K, Parvin B, Tlsty TD.  2014.  Stress signaling from human mammary epithelial cells contributes to phenotypes of mammographic density. Cancer Res. 74:5032-44.
He L, Zhou Y-X, Zhang Y, Hang B, Chang H, Schick SF, Celniker SE, Xia Y, Snijders AM, Mao J-H.  2021.  Thirdhand cigarette smoke leads to age-dependent and persistent alterations in the cecal microbiome of mice.. Microbiologyopen. 10(3):e1198.
Zhong C, Han J, Borowsky A, Parvin B, Wang Y, Chang H.  2017.  When machine vision meets histology: A comparative evaluation of model architecture for classification of histology sections.. Med Image Anal. 35:530-543.