Publication

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Journal Article
Parvin B, Yang Q, Han J, Chang H, Rydberg B, Barcellos-Hoff MHelen.  2007.  Iterative Voting for Inference of Structural Saliency and Characterization of Subcellular Events. {IEEE} Trans. Image Processing. 16:615–623.
Rejniak KA, Wang SE, Bryce NS, Chang H, Parvin B, Jourquin J, Estrada L, Gray JW, Arteaga CL, Weaver AM et al..  2010.  Linking changes in epithelial morphogenesis to cancer mutations using computational modeling. PLoS Comput Biol. 6
Xia Y, Ji Z, Krylov A, Chang H, Cai W.  2017.  Machine Learning in Multimodal Medical Imaging.. Biomed Res Int. 2017:1278329.
Qin X, Wu C, Chang H, Lu H, Zhang X.  2020.  Match Feature U-Net: Dynamic Receptive Field Networks for Biomedical Image Segmentation. Symmetry. 12:1230.
Parvin B., Chang H, Zhou Y..  2015.  Methods for delineating cellular regions and classifying regions of histopathology and microanatomy.
Han J, Chang H, Giricz O, Lee GY, Baehner FL, Gray JW, Bissell MJ, Kenny PA, Parvin B.  2010.  Molecular predictors of 3D morphogenesis by breast cancer cell lines in 3D culture. PLoS Comput Biol. 6:e1000684.
Chang H, Fontenay G, Han J, Cong G, Baehner FL, Gray JW, Spellman PT, Parvin B.  2011.  Morphometic analysis of TCGA glioblastoma multiforme. {BMC} Bioinformatics. 12:484.
Han J, Chang H, Andarawewa K, Yaswen P, Barcellos-Hoff MHelen, Parvin B.  2010.  Multidimensional profiling of cell surface proteins and nuclear markers. IEEE/ACM Trans Comput Biol Bioinform. 7:80-90.
Chang H, Han J, Spellman PT, Parvin B.  2012.  Multireference Level Set for the Characterization of Nuclear Morphology in Glioblastoma Multiforme. {IEEE} Trans. Biomed. Engineering. 59:3460–3467.
Han J, Chang H, Yang Q, Fontenay G, Groesser T, M Barcellos-Hoff H, Parvin B.  2011.  Multiscale iterative voting for differential analysis of stress response for 2D and 3D cell culture models. J Microsc. 241:315-26.
Jiménez-Sánchez D, Ariz M, Chang H, Matias-Guiu X, de Andrea CE, Ortiz-de-Solórzano C.  2022.  NaroNet: Discovery of tumor microenvironment elements from highly multiplexed images.. Med Image Anal. 78:102384.
Bin J, Obst-Huebl L, Mao J-H, Nakamura K, Geulig LD, Chang H, Ji Q, He L, De Chant J, Kober Z et al..  2022.  A new platform for ultra-high dose rate radiobiological research using the BELLA PW laser proton beamline.. Sci Rep. 12(1):1484.
Groesser T, Chang H, Fontenay G, Chen J, Costes SV, Barcellos-Hoff MHelen, Parvin B, Rydberg B.  2011.  Persistence of γ-H2AX and 53BP1 foci in proliferating and non-proliferating human mammary epithelial cells after exposure to γ-rays or iron ions. Int J Radiat Biol. 87:696-710.
Han J, Fontenay GV, Wang Y, Mao J-H, Chang H.  2016.  Phenotypic Characterization of Breast Invasive Carcinoma via Transferable Tissue Morphometric Patterns learned from Glioblastoma Multiforme.. Proc IEEE Int Symp Biomed Imaging. 2016:1025-1028.
Ding D, Yong H, You N, Lu W, Yang X, Ye X, Wang Y, Cai T, Zheng X, Chen H et al..  2022.  Prospective Study Reveals Host Microbial Determinants of Clinical Response to Fecal Microbiota Transplant Therapy in Type 2 Diabetes Patients.. Front Cell Infect Microbiol. 12:820367.
Chang H, Yang Q, Parvin B.  2007.  Segmentation of heterogeneous blob objects through voting and level set formulation. Pattern Recognition Letters. 28:1781–1787.
Chang H, Zhou Y, Borowsky A, Barner KE, Spellman PT, Parvin B.  2015.  Stacked Predictive Sparse Decomposition for Classification of Histology Sections. International Journal of Computer Vision. 113:3–18.
Cheng Q, Bilgin CCagatay, Fonteney G, Chang H, Henderson M, Han J, Parvin B.  2016.  Stiffness of the microenvironment upregulates ERBB2 expression in 3D cultures of MCF10A within the range of mammographic density.. Sci Rep. 6:28987.
DeFilippis RAnna, Fordyce C, Patten K, Chang H, Zhao J, Fontenay GV, Kerlikowske K, Parvin B, Tlsty TD.  2014.  Stress signaling from human mammary epithelial cells contributes to phenotypes of mammographic density. Cancer Res. 74:5032-44.
Liang Y, Dong T, Chen M, He L, Wang T, Liu X, Chang H, Mao J-H, Hang B, Snijders AM et al..  2020.  Systematic Analysis of Impact of Sampling Regions and Storage Methods on Fecal Gut Microbiome and Metabolome Profiles.. mSphere. 5(1)
He L, Zhou Y-X, Zhang Y, Hang B, Chang H, Schick SF, Celniker SE, Xia Y, Snijders AM, Mao J-H.  2021.  Thirdhand cigarette smoke leads to age-dependent and persistent alterations in the cecal microbiome of mice.. Microbiologyopen. 10(3):e1198.
Hang B, Wang P, Zhao Y, Chang H, Mao J-H, Snijders AM.  2020.  Thirdhand smoke: Genotoxicity and carcinogenic potential.. Chronic Dis Transl Med. 6(1):27-34.
Chang H, Han J, Zhong C, Snijders AM, Mao J-H.  2018.  Unsupervised Transfer Learning via Multi-Scale Convolutional Sparse Coding for Biomedical Applications.. IEEE Trans Pattern Anal Mach Intell. 40(5):1182-1194.
Zhong C, Han J, Borowsky A, Parvin B, Wang Y, Chang H.  2017.  When machine vision meets histology: A comparative evaluation of model architecture for classification of histology sections.. Med Image Anal. 35:530-543.
Zhong C, Han J, Borowsky A, Parvin B, Wang Y, Chang H.  2016.  When machine vision meets histology: A comparative evaluation of model architecture for classification of histology sections.. Med Image Anal. 35:530-543.

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