Publication

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Author Title Type [ Year(Asc)]
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2022
Mao AW, Barck H, Young J, Paley A, Mao J-H, Chang H.  2022.  Identification of a novel cancer microbiome signature for predicting prognosis of human breast cancer patients.. Clin Transl Oncol. 24(3):597-604.
Bin J, Obst-Huebl L, Mao J-H, Nakamura K, Geulig LD, Chang H, Ji Q, He L, De Chant J, Kober Z et al..  2022.  A new platform for ultra-high dose rate radiobiological research using the BELLA PW laser proton beamline.. Sci Rep. 12(1):1484.
Bin J, Obst-Huebl L, Mao J-H, Nakamura K, Geulig LD, Chang H, Ji Q, He L, De Chant J, Kober Z et al..  2022.  A new platform for ultra-high dose rate radiobiological research using the BELLA PW laser proton beamline.. Sci Rep. 12(1):1484.
Bin J, Obst-Huebl L, Mao J-H, Nakamura K, Geulig LD, Chang H, Ji Q, He L, De Chant J, Kober Z et al..  2022.  A new platform for ultra-high dose rate radiobiological research using the BELLA PW laser proton beamline.. Sci Rep. 12(1):1484.
2021
Chang H, Yang X, Moore J, Liu X-P, Jen K-Y, Snijders AM, Ma L, Chou W, Corchado-Cobos R, García-Sancha N et al..  2021.  From Mouse to Human: Cellular Morphometric Subtype Learned From Mouse Mammary Tumors Provides Prognostic Value in Human Breast Cancer.. Front Oncol. 11:819565.
2020
Mao J-H, Kim Y-M, Zhou Y-X, Hu D, Zhong C, Chang H, Brislawn CJ, Fansler S, Langley S, Wang Y et al..  2020.  Genetic and metabolic links between the murine microbiome and memory.. Microbiome. 8(1):53.
2018
Vatter FAPelissie, Schapiro D, Chang H, Borowsky AD, Lee JK, Parvin B, Stampfer MR, LaBarge MA, Bodenmiller B, Lorens JB.  2018.  High-Dimensional Phenotyping Identifies Age-Emergent Cells in Human Mammary Epithelia.. Cell Rep. 23(4):1205-1219.
Vatter FAPelissie, Schapiro D, Chang H, Borowsky AD, Lee JK, Parvin B, Stampfer MR, LaBarge MA, Bodenmiller B, Lorens JB.  2018.  High-Dimensional Phenotyping Identifies Age-Emergent Cells in Human Mammary Epithelia.. Cell Rep. 23(4):1205-1219.
2017
Zhong C, Han J, Borowsky A, Parvin B, Wang Y, Chang H.  2017.  When machine vision meets histology: A comparative evaluation of model architecture for classification of histology sections.. Med Image Anal. 35:530-543.
2016
Bilgin CCagatay, Fontenay G, Cheng Q, Chang H, Han J, Parvin B.  2016.  BioSig3D: High Content Screening of Three-Dimensional Cell Culture Models. PLoS One. 11:e0148379.
Han J, Wang Y, Cai W, Borowsky A, Parvin B, Chang H.  2016.  Integrative Analysis of Cellular Morphometric Context Reveals Clinically Relevant Signatures in Lower Grade Glioma. Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2016 - 19th International Conference, Athens, Greece, October 17-21, 2016, Proceedings, Part {I}.
Cheng Q, Bilgin CCagatay, Fonteney G, Chang H, Henderson M, Han J, Parvin B.  2016.  Stiffness of the microenvironment upregulates ERBB2 expression in 3D cultures of MCF10A within the range of mammographic density.. Sci Rep. 6:28987.
Zhong C, Han J, Borowsky A, Parvin B, Wang Y, Chang H.  2016.  When machine vision meets histology: A comparative evaluation of model architecture for classification of histology sections.. Med Image Anal. 35:530-543.
2015
Zhou Y, Chang H, Barner KE, Parvin B.  2015.  Nuclei segmentation via sparsity constrained convolutional regression. 12th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2015, Brooklyn, NY, USA, April 16-19, 2015.
Groesser T, Fontenay GV, Han J, Chang H, Pluth J, Parvin B.  2015.  Quantification of the Dynamics of DNA Repair to Ionizing Radiation via Colocalization of 53BP1 and γH2AX. Video Bioinformatics: From Live Imaging to Knowledge.
Chang H, Zhou Y, Borowsky A, Barner KE, Spellman PT, Parvin B.  2015.  Stacked Predictive Sparse Decomposition for Classification of Histology Sections. International Journal of Computer Vision. 113:3–18.
Chang H, Zhou Y, Borowsky A, Barner KE, Spellman PT, Parvin B.  2015.  Stacked Predictive Sparse Decomposition for Classification of Histology Sections. International Journal of Computer Vision. 113:3–18.
2014
Zhou Y, Chang H, Barner KE, Spellman PT, Parvin B.  2014.  Classification of Histology Sections via Multispectral Convolutional Sparse Coding. 2014 {IEEE} Conference on Computer Vision and Pattern Recognition, {CVPR} 2014, Columbus, OH, USA, June 23-28, 2014.
2013
Chang H, Borowsky A, Spellman PT, Parvin B.  2013.  Classification of Tumor Histology via Morphometric Context. 2013 {IEEE} Conference on Computer Vision and Pattern Recognition, Portland, OR, USA, June 23-28, 2013.
Nayak N, Chang H, Borowsky A, Spellman PT, Parvin B.  2013.  Classification of tumor histopathology via sparse feature learning. {ISBI}.
Bilgin CCagatay, Kim S, Leung E, Chang H, Parvin B.  2013.  Integrated profiling of three dimensional cell culture models and 3D microscopy. Bioinformatics. 29:3087–3093.
Chang H, Han J, Borowsky A, Loss LA, Gray JW, Spellman PT, Parvin B.  2013.  Invariant Delineation of Nuclear Architecture in Glioblastoma Multiforme for Clinical and Molecular Association. {IEEE} Trans. Med. Imaging. 32:670–682.
Louie KB, Bowen BP, McAlhany S, Huang Y, Price JC, Mao J-H, Hellerstein M, Northen TR.  2013.  Mass spectrometry imaging for in situ kinetic histochemistry.. Sci Rep. 3:1656.
Chang H, Fontenay G, Bilgin CCagatay, Borowsky A, Spellman P, Parvin B.  2013.  Molecular Correlates of Morphometric Subtypes in Glioblastoma Multiforme. Computational Systems Biology: From Molecular Mechanisms to Disease: Second Edition. :423–454.
Chang H, Fontenay G, Bilgin CCagatay, Borowsky A, Spellman P, Parvin B.  2013.  Molecular Correlates of Morphometric Subtypes in Glioblastoma Multiforme. Computational Systems Biology: From Molecular Mechanisms to Disease: Second Edition. :423–454.

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